Phagocyte Biology Laboratory

Dr. Bryan Heit, Western University

Various bits of matlab code, for public consumption. Much of this was made for in-house use, so code and comment quality may be poor. Use at your own risk. All .m files have have their extension changed to .txt to get around some security filters – change the extension back to .m prior to use.

  • Adjacency_stats¬†– a simple implementation of the threshold adjacency statistics method from¬†Hamilton et al. (2007). BMC Bioinformatics Vol8 #110. Function must be passed an image a 1×27 vector. This vector can be accumulated across multiple images, and can then be passed to a PCA or other function for cluster identification.